PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA016336-PA

Common Name

OsI_15773

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 131aa MW: 15063.1 Da PI: 8.3251

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA016336-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.8	1.8e-14	45	97	45	97
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + ++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q++ql+ +la BGIOSGA016336-PA 45 IRQELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQVSQLQMQLAIG 97 5689999******************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.9E-12	47	96	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MLIKDYLYHV HSDFIHGKAR LYLQQCGRRD QRVKLPTCAG GSEEIRQELP VQQQGDTVSS 60 LVYEANDRMR DPVYDCVRAI SFLQNQVSQL QMQLAIGQGE NLCIQMQHRR FAAQYRVNRP 120 NLAISQDPLG S

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR855110	1e-101	CR855110.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0502B11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624534.1	2e-29	LOB domain-containing protein 12
Refseq	XP_015638859.1	2e-29	LOB domain-containing protein 12
Refseq	XP_025806795.1	2e-29	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	6e-25	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A2XT36	6e-92	A2XT36_ORYSI; Uncharacterized protein
STRING	OGLUM04G11190.1	7e-58	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP30777	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-27	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]