PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA016426-PA

Common Name

OsI_15920

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 213aa MW: 22397.1 Da PI: 4.7475

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA016426-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	4	20	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka+i+e +++YIk+Lq BGIOSGA016426-PA 4 DKATIVEATINYIKNLQ 20 8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-5	3	33	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDTDKATIVE ATINYIKNLQ DKIHKMEMLK VEREHAIALA TAATATAAAS ADTALQAPPP 60 SEEENEEHDS GVAAATREMA LADMVHAWEQ QQEAAATGGS HGGHAVPPPP PAASLQTWTG 120 PNMTASLTGD DGFITLSLPH QGGQKNLVAG AVSVLERHHI DVVTATVSAS EQGDNLISLH 180 CHLSPGSSSS QNLTPLDKFK LAMSELMLWV ISV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.54995	0.0	flower\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115458417	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107268	0.0	AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635110.1	1e-151	transcription factor bHLH95
TrEMBL	B8ATS9	1e-153	B8ATS9_ORYSI; Uncharacterized protein
STRING	OS04T0429300-01	1e-150	(Oryza sativa)
STRING	ONIVA04G10990.1	1e-149	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91