PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016427-PA
Common NameOsI_15921
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 350aa    MW: 37325.3 Da    PI: 8.921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016427-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08115175855
                       HHHHHHHHHHHHHHHHHCTSCC.C...............TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.as............kapskKlsKaeiLekAveYIksLq 55 
                        Er RR+++++ f++L  llPk +               ++   +Ka+i+ +A+ YIk L+
  BGIOSGA016427-PA 115 TERERRKKMKNMFSTLHGLLPKiPGkvanaiekfyisLIYQDLTDKASIVGEAIGYIKTLE 175
                       7*********************555***********7777777***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.227107174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-12111192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.98E-8112179No hitNo description
Gene3DG3DSA:4.10.280.102.0E-10112185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-4115180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6115175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSQEGADLSQ DVDESPYHTA VVTTNNLVRS IKAEKSNSSS SSGKPVETDI GLKVASPTMF  60
GFNTKIEGTG KNMAVKREEG EGGGRPGVSN GVSTRDTNGK GKNAMDMEHA LHIWTERERR  120
KKMKNMFSTL HGLLPKIPGK VANAIEKFYI SLIYQDLTDK ASIVGEAIGY IKTLEDVVQK  180
LETIKTERVR AHQWAAAAAA AVAANGGGEG SSHSHSQPPR HATAVTVAVA EPAPVAAAVN  240
AQAPQKKAAA AAAPTLQTWS APNITLTMAG VDAFINMCLP RQRASFTTVA FVLEKHQIDV  300
VTSTISADHD KSLFSVHVRL NEASLQSTEG LTPEAKYKLA VSELMVRLAE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329939370.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087280.0AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636599.10.0transcription factor bHLH95
TrEMBLA2XTI80.0A2XTI8_ORYSI; Uncharacterized protein
STRINGORUFI04G14020.10.0(Oryza rufipogon)
STRINGOS04T0429400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-18bHLH family protein