PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA016473-PA

Common Name

OsI_16039

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 175aa MW: 17468.4 Da PI: 8.5164

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA016473-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F+++ L H++ H BGIOSGA016473-PA 35 FSCCYCPRKFRSSQALGGHQNAH 57 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.076	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEFGMVEDAA AAAGEEGLTL SLSLQPSPPR FQALFSCCYC PRKFRSSQAL GGHQNAHKLQ 60 RNLARRGREA AASLAAAAAA AAAAAASSGD QQQQGRTTAA AAAVLAGGES APPAAARAAA 120 DLDGAGVWGG AGMRGRPAHH HRLMQGGYSS GGSSAAGGRG NGELADEMID LSLKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.98662	0.0	panicle

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635414.1	1e-119	homeobox even-skipped homolog protein 2
TrEMBL	A0A0E0H1C7	1e-117	A0A0E0H1C7_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0P9P3	1e-117	A0A0E0P9P3_ORYRU; Uncharacterized protein
TrEMBL	A2XTW0	1e-117	A2XTW0_ORYSI; Uncharacterized protein
TrEMBL	I1PLM0	1e-117	I1PLM0_ORYGL; Uncharacterized protein
TrEMBL	Q7XRM1	1e-117	Q7XRM1_ORYSJ; C2H2 zinc finger malformed spikelet
STRING	ORUFI04G15140.1	1e-118	(Oryza rufipogon)
STRING	OS04T0444100-00	1e-118	(Oryza sativa)
STRING	ONIVA04G12070.1	1e-118	(Oryza nivara)
STRING	ORGLA04G0108900.1	1e-118	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6992	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-13	zinc finger protein 2