PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016597-PA
Common NameOsI_16296
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 298aa    MW: 32747 Da    PI: 3.9412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016597-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.63.8e-13131551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk.....kvkaeek.ewyfFskrdkkyatgkrknratksgyWk 84 
                       lp G+rF+P+d +++ +yL + + +      +  +v++ vd++ + P  +p         ++++ + yfF  + +     + + r +  g W 
  BGIOSGA016597-PA  13 LPWGYRFRPSDRQIIANYLGPMAIHGAdslPQRGDVVEGVDVFATRPAAIPFelrrhV-FGRDEvRAYFFGDQPTD----S-RGREVPGGAWL 99 
                       689****************99976665475455578**************95355422.22334377999887554....3.4577899**** PP

               NAM  85 atgkdkevlsk...kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                         g   + +s    +ge+v  ++   f           ++a ++ + +W m+eyrl
  BGIOSGA016597-PA 100 PCGGGDKAYSGgadGGEAVAYRRKYEFRaaneeadraGEEAATPARPRWRMKEYRL 155
                       999988888877778888*********97776665532467777899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-224184IPR003441NAC domain
PROSITE profilePS5100523.01713185IPR003441NAC domain
PfamPF023651.0E-914155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MASSAHMAAV LNLPWGYRFR PSDRQIIANY LGPMAIHGAD SLPQRGDVVE GVDVFATRPA  60
AIPFELRRHV FGRDEVRAYF FGDQPTDSRG REVPGGAWLP CGGGDKAYSG GADGGEAVAY  120
RRKYEFRAAN EEADRAGEEA ATPARPRWRM KEYRLNKSAA AFRRAYAQPN PKANMDCVVR  180
EIYTKAVPPP TPPSGRSGDE EMQEGSDYSV MDEDELVDYL LQGFEDGNFD EDQDQPAAAE  240
DGDYSDEDED QPAAAEDGDY SDEDQDQPAA AEDGDYSDED QDQPAAAEDG DYSDEDEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551890.0CR855189.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634860.10.0NAC domain-containing protein 67-like
TrEMBLA2XUL20.0A2XUL2_ORYSI; Uncharacterized protein
TrEMBLQ01IX80.0Q01IX8_ORYSA; OSIGBa0106G07.6 protein
STRINGONIVA04G14090.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.14e-10NAC domain containing protein 95