PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA016602-PA

Common Name

OsI_16307

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 918aa MW: 104019 Da PI: 8.9517

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA016602-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	3.9e-21	169	254	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY eY++++GF v+k++s++ +g +++tfvC+k g ++ + + r+r + +tgCka+++vk ++ +++wev +eleHnH+++ BGIOSGA016602-PA 169 RFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNTtENQWEVVFVELEHNHPCN 254 5**************99988..9999**********99887...8999**************9*************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-19	169	254	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-25	379	472	IPR018289	MULE transposase domain
Pfam	PF04434	1.4E-6	648	692	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.742	660	696	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-4	671	698	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MGMKIGGKIL QIPYFLIRSM VRASVTLPLH LGQAHGPGSG EDDKLGFGVG AGAVSWVWRE 60 VWAVLAQPES LSQERAVGGL SSRDEGEREV PRWMTALAAG YGEGGGVSDY PSADVMDTHH 120 SDQYAKSSLQ LQFRDTSVSF ENNNSVLDKH DITSPQVGMT FETADLAYRF YLEYGYRAGF 180 GVSKRTSHSV DGVKYRATFV CYKGGIARIK PGLKARRRLV AKTGCKAMMV VKYNTTENQW 240 EVVFVELEHN HPCNPEMVRF MMCFKDLPDW QREHRPFNAK TRLNPKIHSG RGRPPNQNKD 300 FMVKKTFSQS NYSIEAAGKA GKLRFAEGDV EALLVFFDKM QAQNSNFFYN WDMDDEGRLK 360 NVCWVDARSR AAYQHFCDVV CFDTVYLTYQ FVIPLVAFLG INHHGQFVLL GCGLLGDESP 420 ETFSWLFKKW LKCMNDKSPE AIITTHSRPV VKAVAEVFPN TRHRYNLWHI MKELPEMSGR 480 VEDKEAISLR MKKVVFDTIT STDFEREWVE MVNQYNLHDN HWLTTLFEER AKWVPAYVKD 540 TFWAGISTVR RSERLEAFFD GYITPETTIK TFIEQFDTAM KLRSDREAYD DFRSFQQRPQ 600 VLSGLLFEEQ FANVYTINMF QKFQDHLKQL MNVTCTEVSR NGSIVTYTVT VIGKERKYDY 660 KVMYNSAEKE VWCICRSFQF KGILCSHALA VLRQELVMLI PYKYILDRWR KDYKCPEESK 720 ETPISPKAIK ATGKGTKPEN AREDKVDNLY KHGHQYFADI VEMGATDPDA MEYVLSVMKE 780 AKEKVRKFEE SRKDRRPGDS PVSTGKRNGK SSRPSNDDGG NGISDSTPAT TTVPTVAVAT 840 STTMQATPTM VAIAPTSATV PAGMFLVPMH PHPMVFPPFT PAVPPVVAPA VPPPAPAANV 900 GDVASNSTRK RKKRKGNK

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MGMKIGGKIL QIPYFLIRSM VRASVTLPLH LGQAHGPGSG EDDKLGFGVG AGAVSWVWRE  60
VWAVLAQPES LSQERAVGGL SSRDEGEREV PRWMTALAAG YGEGGGVSDY PSADVMDTHH  120
SDQYAKSSLQ LQFRDTSVSF ENNNSVLDKH DITSPQVGMT FETADLAYRF YLEYGYRAGF  180
GVSKRTSHSV DGVKYRATFV CYKGGIARIK PGLKARRRLV AKTGCKAMMV VKYNTTENQW  240
EVVFVELEHN HPCNPEMVRF MMCFKDLPDW QREHRPFNAK TRLNPKIHSG RGRPPNQNKD  300
FMVKKTFSQS NYSIEAAGKA GKLRFAEGDV EALLVFFDKM QAQNSNFFYN WDMDDEGRLK  360
NVCWVDARSR AAYQHFCDVV CFDTVYLTYQ FVIPLVAFLG INHHGQFVLL GCGLLGDESP  420
ETFSWLFKKW LKCMNDKSPE AIITTHSRPV VKAVAEVFPN TRHRYNLWHI MKELPEMSGR  480
VEDKEAISLR MKKVVFDTIT STDFEREWVE MVNQYNLHDN HWLTTLFEER AKWVPAYVKD  540
TFWAGISTVR RSERLEAFFD GYITPETTIK TFIEQFDTAM KLRSDREAYD DFRSFQQRPQ  600
VLSGLLFEEQ FANVYTINMF QKFQDHLKQL MNVTCTEVSR NGSIVTYTVT VIGKERKYDY  660
KVMYNSAEKE VWCICRSFQF KGILCSHALA VLRQELVMLI PYKYILDRWR KDYKCPEESK  720
ETPISPKAIK ATGKGTKPEN AREDKVDNLY KHGHQYFADI VEMGATDPDA MEYVLSVMKE  780
AKEKVRKFEE SRKDRRPGDS PVSTGKRNGK SSRPSNDDGG NGISDSTPAT TTVPTVAVAT  840
STTMQATPTM VAIAPTSATV PAGMFLVPMH PHPMVFPPFT PAVPPVVAPA VPPPAPAANV  900
GDVASNSTRK RKKRKGNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	908	912	RKRKK
2	908	914	RKRKKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.6193	0.0	callus\| flower\| leaf\| panicle\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32986687	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855189	0.0	CR855189.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106G07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634987.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_015634988.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_015634989.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	B8AVG1	0.0	B8AVG1_ORYSI; Uncharacterized protein
STRING	OS04T0476500-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-117	FAR1-related sequence 6