PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016694-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 242aa    MW: 25109.8 Da    PI: 8.0929
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016694-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.1e-082056437
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      r C+ ++ + ++lfC+ +  +lC+ C    H g    H
  BGIOSGA016694-PA 20 RACDACGGEAARLFCRADAAFLCAGCDARAH-GpgsrH 56
                      68*************************9999.545556 PP
2zf-B_box23.61.1e-0759103341
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                        + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  BGIOSGA016694-PA  59 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 103
                       679*****************************6688888898877 PP
3CCT65.12.1e-22148191144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+l+RY eKrk+R+Fe++irY+sRKa+Ae+RpR+KGrF+k++
  BGIOSGA016694-PA 148 REARLMRYXEKRKSRRFERTIRYASRKAYAETRPRIKGRFAKRT 191
                       9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-91761IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4241761IPR000315B-box-type zinc finger
CDDcd000212.06E-82061No hitNo description
PfamPF006433.0E-62057IPR000315B-box-type zinc finger
PROSITE profilePS5011910.42457104IPR000315B-box-type zinc finger
PfamPF006434.9E-659104IPR000315B-box-type zinc finger
SMARTSM003364.6E-962104IPR000315B-box-type zinc finger
PfamPF062036.1E-17148190IPR010402CCT domain
PROSITE profilePS5101716.251148190IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEGDDKSAVV GGAYWGLAAR ACDACGGEAA RLFCRADAAF LCAGCDARAH GPGSRHARVW  60
LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGA LADAPKPGSG  120
IILGGGGGAG RGGGRRRSDA GGEQGREREA RLMRYXEKRK SRRFERTIRY ASRKAYAETR  180
PRIKGRFAKR TKGGAGADAD ADADADGEDE EMYSSGAAAV AALMAPGGSD ADYGVDGVVP  240
TF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.465980.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379906470.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066270.0AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552090.0CR855209.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976103.15e-69zinc finger protein CONSTANS-LIKE 3
SwissprotQ9FHH81e-41COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
SwissprotQ9SK537e-42COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLK3Y8Q01e-67K3Y8Q0_SETIT; Uncharacterized protein
STRINGSi010592m2e-68(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.22e-27CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]