PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA016802-PA

Common Name

OsI_16729

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 418aa MW: 47485.5 Da PI: 5.9174

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA016802-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.7	1.2e-10	327	370	1	41
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkr 41 +f+n+YA++vGFsv++++++ks kr g+itk+t++C++ ++ BGIOSGA016802-PA 327 SFFNFYAYQVGFSVVITHHYKStskKRFGHITKYTYQCYRCYRA 370 59*****************99989999*******996555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-8	327	370	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MKFTEPVKGG SMEKKGREAI QEGETIRQQS EESKNDAMQI EGSKRNINMA PGRLAYARSP 60 NIYNLQEGEG SSSKMPHLGC RKIQHVGKNF NSPELSNTIG TIASEVVNYG GQMLYDQFTL 120 LNLDPRQEGQ LSYTNLIHQI IHSPTVTIQQ QTGGQESFTS LLRTPAFDNS MILTTSRFSP 180 ELEEQQDMTY EQHISTTHWS YEEFDQIYNN KYITPFAENT TARIEELYQS KNSHFTTKEG 240 TSNMLQQDSQ INTITAIEQV EQHVGQAETT SETKATSAED NDTINEEDIN NYLANEEDSQ 300 DNTPVVIDKK HIPCIGKKFR THEEARSFFN FYAYQVGFSV VITHHYKSTS KKRFGHITKY 360 TYQCYRCYRA SDSGSADGIC GVRADLLPRS VPIAVPAEEA RPRGSFRRYT PYYNVNSI

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MKFTEPVKGG SMEKKGREAI QEGETIRQQS EESKNDAMQI EGSKRNINMA PGRLAYARSP  60
NIYNLQEGEG SSSKMPHLGC RKIQHVGKNF NSPELSNTIG TIASEVVNYG GQMLYDQFTL  120
LNLDPRQEGQ LSYTNLIHQI IHSPTVTIQQ QTGGQESFTS LLRTPAFDNS MILTTSRFSP  180
ELEEQQDMTY EQHISTTHWS YEEFDQIYNN KYITPFAENT TARIEELYQS KNSHFTTKEG  240
TSNMLQQDSQ INTITAIEQV EQHVGQAETT SETKATSAED NDTINEEDIN NYLANEEDSQ  300
DNTPVVIDKK HIPCIGKKFR THEEARSFFN FYAYQVGFSV VITHHYKSTS KKRFGHITKY  360
TYQCYRCYRA SDSGSADGIC GVRADLLPRS VPIAVPAEEA RPRGSFRRYT PYYNVNSI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855230	0.0	CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8ASC3	0.0	B8ASC3_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27275	2	2