PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016846-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 390aa    MW: 41552.7 Da    PI: 7.9786
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016846-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.5e-19305339135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  BGIOSGA016846-PA 305 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 339
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.018299335IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-18299353IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-14302362No hitNo description
Gene3DG3DSA:3.30.50.101.8E-15303337IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.61E-15304361No hitNo description
PROSITE patternPS003440305330IPR000679Zinc finger, GATA-type
PfamPF003202.7E-17305339IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MPSYAHHHSS LDGKMDALKS SCRSEEAADE GAAAAPSAWG MVERDGFSVE DLLDLEEFCE  60
AEKDAAEENE QALALVAAPE EEKSKDDSQP SSVVTYELVA PPPPPPEIVD LPAHDVEELE  120
WVSRIMDDSL SELPPPPQPP ASVVASLAAR PPQPRQLQRR PQDGAYRALP PASYPVRTPT  180
ICALSTEALV PVKAKRSKRS RATAWSLSGA PPFSDSTSSS STTTTSSCSS SASFSSFSPL  240
LKFEWHPLGG TSDLPDDHLL PPGKKSKHGK NGKNKPKKRG RKPKQLPPHP SGAAASAPAP  300
GDRRCSHCGV QKTPQWRAGP EGAKTLCNAC GVRYKSGRLL PEYRPACSPT FVSAIHSNSH  360
RKVLEMRRKK EVGSGLLTAA AAAAPAVASF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.184490.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379892340.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605740.0AK060574.1 Oryza sativa Japonica Group cDNA clone:001-023-D04, full insert sequence.
GenBankAK0991440.0AK099144.1 Oryza sativa Japonica Group cDNA clone:J023055K24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636682.10.0GATA transcription factor 6
TrEMBLA0A0E0H3N80.0A0A0E0H3N8_ORYNI; Uncharacterized protein
STRINGOS04T0539500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-40GATA transcription factor 5