PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA016883-PA
Common NameOsI_16892
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 167aa    MW: 17597.7 Da    PI: 9.8746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA016883-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-1963112255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+++++g
  BGIOSGA016883-PA  63 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAALAIKG 112
                       69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-2263121IPR016177DNA-binding domain
SMARTSM003807.1E-3763126IPR001471AP2/ERF domain
PfamPF008472.6E-1363112IPR001471AP2/ERF domain
PROSITE profilePS5103223.14363120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3263121IPR001471AP2/ERF domain
CDDcd000186.95E-3264122No hitNo description
PRINTSPR003671.8E-116475IPR001471AP2/ERF domain
PRINTSPR003671.8E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEQEQVMSQE SNSCTCSSSS NDASSAACSS LNASSPSSVD SGSAGGGGGG KKRPRSDHLK  60
HPTYRGVRMR SWGKWVSEIR EPRKKSRIWL GTFDTAEMAA RAHDVAALAI KGRTTHLNFP  120
DLAHLLPRAA SASPKDVQAA AALAAATASP APALSPTPCH DVERRCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-19601201172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.506398e-92root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329940398e-92
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880927.11e-112ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ77e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA2XW661e-117A2XW66_ORYSI; Uncharacterized protein
STRINGONIVA04G19060.11e-112(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.14e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]