PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA017037-PA

Common Name

OsI_17230

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 451aa MW: 46547.1 Da PI: 6.1775

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA017037-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.3e-31	246	304	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ BGIOSGA017037-PA 246 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 304 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.109	240	306	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-26	243	306	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	9.7E-31	243	306	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	245	305	IPR003657	WRKY domain
Pfam	PF03106	9.6E-26	247	304	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MCDYFLQRME GDQAGGDLTD IVRAGGGAMP GSVVVDLPST AAEWQLPAEP MLFPPPPSLS 60 STTDGCGAGG AAGADIFGGG GGDLFSGLVD PFSSDYSSGA DFLDAMPDAM AKVGFDTAVG 120 GGCGGGGGGG GGSGGHLLDM SRKPLLPRGM PMAAVGGLAA PRVMPSPLSP RAIRPYPPIS 180 AGDMMKLGIT AGQAAGCAID AAVAGMQMSS PRSGGIKRRK NQARKVVCIP APTAAGGRPS 240 GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE 300 HNHPWPTQRN ALAGSTRSHH SKNSGGGGGS GSKGSQNDKS QQQPSVKEEQ KDQATTATTT 360 TTSTITTTNS ASPVVVKEEE AALAGSSEAL DTTAAGVVDH SELMDHVFSE SYKPMIPETG 420 QPDDFFADLA ELEYKKIIFY VDVLLGYRDS S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MCDYFLQRME GDQAGGDLTD IVRAGGGAMP GSVVVDLPST AAEWQLPAEP MLFPPPPSLS  60
STTDGCGAGG AAGADIFGGG GGDLFSGLVD PFSSDYSSGA DFLDAMPDAM AKVGFDTAVG  120
GGCGGGGGGG GGSGGHLLDM SRKPLLPRGM PMAAVGGLAA PRVMPSPLSP RAIRPYPPIS  180
AGDMMKLGIT AGQAAGCAID AAVAGMQMSS PRSGGIKRRK NQARKVVCIP APTAAGGRPS  240
GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE  300
HNHPWPTQRN ALAGSTRSHH SKNSGGGGGS GSKGSQNDKS QQQPSVKEEQ KDQATTATTT  360
TTSTITTTNS ASPVVVKEEE AALAGSSEAL DTTAAGVVDH SELMDHVFSE SYKPMIPETG  420
QPDDFFADLA ELEYKKIIFY VDVLLGYRDS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	220	307	2	80	Disease resistance protein RRS1
5w3x_D	2e-25	220	307	2	80	Disease resistance protein RRS1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115460269	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634477.1	0.0	probable WRKY transcription factor 4
Swissprot	O64747	6e-68	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	B8ATK6	0.0	B8ATK6_ORYSI; Uncharacterized protein
STRING	OBART04G23800.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-65	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]