PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017051-PA
Common NameOsI_17252
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 282aa    MW: 31013.3 Da    PI: 8.7589
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017051-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.6e-342478155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  BGIOSGA017051-PA 24 KPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 78
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5022181IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-332180IPR009057Homeodomain-like
SuperFamilySSF466891.76E-162480IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-242479IPR006447Myb domain, plants
PfamPF002492.9E-92677IPR001005SANT/Myb domain
PfamPF143791.8E-21125169IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MFEGCYGGVG SAAAAAAAAT RDPKPRLRWT PDLHERFVDA VTRLGGPDKA TPKSVLRLMG  60
MKGLTLYHLK SHLQKYRLGR QSKKSAGLEL AVADSGEFTA EGISFSIGAP PRNPAGGNNT  120
GEIPLADALK YQVEVQRKLQ EQLEVQKKLQ MRIEAQGRYL KEILEKAQKN ISLDANGSAN  180
LSSTRSQITD INLALSGFMD NATQVQEENN ELMKPISDDN LKVNNLGFQL YHLGSQESKD  240
VKCTPKTEEL LLLDLNIQGG YELSSRGMQG CELDLKINQQ RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-212480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-212480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-212480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-212480157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.129370.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329916090.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064000.0AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635409.10.0myb family transcription factor PHL11 isoform X2
TrEMBLB8ATM60.0B8ATM6_ORYSI; Uncharacterized protein
STRINGONIVA04G23170.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-53G2-like family protein