PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017088-PA
Common NameOsI_17342
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 222aa    MW: 22842 Da    PI: 10.0027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017088-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-192474155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++ a++ ++g
  BGIOSGA017088-PA 24 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDSAALHFRG 74
                      689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-132474IPR001471AP2/ERF domain
CDDcd000181.72E-202481No hitNo description
PROSITE profilePS5103224.3952582IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-312582IPR001471AP2/ERF domain
SMARTSM003804.2E-362588IPR001471AP2/ERF domain
PRINTSPR003671.5E-102637IPR001471AP2/ERF domain
PRINTSPR003671.5E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAPRNAAEAV AVAVAEGGGD GMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA  60
AARAYDSAAL HFRGPKAKTN FPVAFAHAHH HAPPPPLPKA AALAVVSPTS STVESSSRDT  120
PAAAPVAAAA KAQVPASPSL DLSLGMSAMV AAQPFLFLDP RVAVTVAVAA PVPRRPAVVS  180
VKKEVARLDE QSDTGSSSSV VDASPAVGVG LDLNLPPPIE EA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-202683664ATERF1
3gcc_A1e-202683664ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.590320.0callus| leaf| panicle| root| vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551620.0CR855162.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0152L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633875.11e-151ethylene-responsive transcription factor 11
TrEMBLA2XXD81e-151A2XXD8_ORYSI; Uncharacterized protein
TrEMBLQ01JS91e-151Q01JS9_ORYSA; OSIGBa0152L12.5 protein
STRINGORUFI04G26530.11e-151(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.14e-20ERF domain protein 11