PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017690-PA
Common NameOsI_20709, WRKY58
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 180aa    MW: 18452.2 Da    PI: 4.5408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017690-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.48.9e-11128148121
                       ---SS-EEEEEEE--TT-SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                       ldDgy+WrKYGqK vk+s+fp
  BGIOSGA017690-PA 128 LDDGYRWRKYGQKAVKNSDFP 148
                       59*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-11114148IPR003657WRKY domain
SuperFamilySSF1182901.01E-8120148IPR003657WRKY domain
PROSITE profilePS5081111.841123148IPR003657WRKY domain
SMARTSM007744.9E-4128158IPR003657WRKY domain
PfamPF031061.4E-6129148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDGLEAAAGD QQHGRLLIPQ LPAAYLASSS MAALSPAGDD WAASLILPDG GSAAAGVGED  60
DLGGGVMAAA AEESSCGGSS TVTSSGVTEA APAAATTTRR GRGNGKKAGG GGRTPRFAFH  120
TRSENDILDD GYRWRKYGQK AVKNSDFPSD DELLFSDVDN TQTATENLRF IPLGRVYITG
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329941182e-34
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639822.11e-100probable WRKY transcription factor 24
TrEMBLQ6IEM31e-126Q6IEM3_ORYSI; WRKY transcription factor 58
STRINGOBART05G23480.11e-100(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.15e-14WRKY DNA-binding protein 75
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]