PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017795-PA
Common NameOsI_20470
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 625aa    MW: 68448.3 Da    PI: 9.1186
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017795-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06102122425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       + C f+a+ G Ck G +C+F H
  BGIOSGA017795-PA 102 RTCTFYAQ-GRCKNGKSCTFLH 122
                       78******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-597123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.60598125IPR000571Zinc finger, CCCH-type
SMARTSM003560.004398124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-698123IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MLRSCGGGQR LVPHLLIMAA GFVGVIAAEK KPALQLHGDE KYQKKAGNDP VPPTIDDTSK  60
TGGLHLHGGH VSQSPPDSNA LSSQRFGSSS PGGDMKNKTR KRTCTFYAQG RCKNGKSCTF  120
LHEGEVSGSD NQVYGNHGGT GEGSEIQHPS SSKEHQFKNS AGSSQHEIYR TLVHAYGEDN  180
RGLTHPVVKH SCHMLKASHG FKIGGSLTAN PTNEVVQLPV VQEKNHEPYF MGHQISLGTN  240
NCLNDMGAYS RLRLDGGKLQ FEVAKGDSPR DSHLSRSYLE KNPLKPDYRY QPFDSTISLD  300
PHQYSKKLSA YGGATENLPH KHQEEKSSSH VSYSLNSYTG FRKQGHDSSD FFLVNQSLRA  360
TSHHGTLPLH QLTPDKDASH HKGADFDKGG TSRSTLHVSS SSQPVVASAG KLSPIKDEVW  420
ITSVPFVPSF NFPDFPGSTS PSKSQYDPLV DSIDPPKVES LNNLKTSNIS CSISSQHVDT  480
NVIRGGSLEK PLTFADKLAR NVSAKGSNDF GLISYDRGHS SSLDGDNRVK TCERKNDASL  540
NNEKSDFRFH LVEHVKELVK PIWKEGNLSK EAHKLIVKKS VDKIFASLEP NQMPETEKAI  600
TTYITASAPK IEKLVKAYVD RYRTS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.985910.0panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085230.0AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAC1306050.0AC130605.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0010D04, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLB8AZJ70.0B8AZJ7_ORYSI; Uncharacterized protein
STRINGORUFI05G22860.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-15C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]