PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017944-PA
Common NameOsI_20162
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 314aa    MW: 33887 Da    PI: 6.8463
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017944-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-083781244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      g+W++eE + + +a + l  +   +W+++a  ++ g+t  ++  ++
  BGIOSGA017944-PA 37 GAWSQEENKVFEQALAALDRNdpeRWERVALLLP-GKTVADVMTHY 81
                      79*****************99*************.********999 PP
2Myb_DNA-binding45.71.5e-14151195347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  BGIOSGA017944-PA 151 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 195
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.8E-73587IPR001005SANT/Myb domain
PfamPF002491.8E-53781IPR001005SANT/Myb domain
SuperFamilySSF466892.23E-93792IPR009057Homeodomain-like
PROSITE profilePS500906.2493785IPR017877Myb-like domain
CDDcd001674.96E-63881No hitNo description
PROSITE profilePS5129417.568144200IPR017930Myb domain
SuperFamilySSF466891.36E-17146200IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-17147198IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-12148194IPR009057Homeodomain-like
SMARTSM007175.8E-13148198IPR001005SANT/Myb domain
PfamPF002497.3E-12151195IPR001005SANT/Myb domain
CDDcd001672.10E-11151196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMESYMEVLP PAPAHYFVGQ AAAAGGWFLP DRRGGGGAWS QEENKVFEQA LAALDRNDPE  60
RWERVALLLP GKTVADVMTH YDDLENDVCF IEAGLVPFPH YGAAGGGGGS GFTLDWDGGD  120
DPAGLGFKRS CYMVGGKRAR GPDQERKKGV PWTEEEHKLF LMGLKKYGRG DWRNISRNFV  180
TSRTPTQVAS HAQKYFIRLN SGGKDKRRSS IHDITTVNLP DDDHGNPSPS PPPSVLTAHS  240
SSAAAAVSEQ FGVLVDGKPP PPPLGRGAGH HHFMPHPYAQ VKIEAGNSHV AGGGRLDDSV  300
LVQMQCGQLM QPLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1733106578RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.183920.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329781560.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681380.0AK068138.1 Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence.
GenBankCT8294710.0CT829471.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI237A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637475.10.0transcription factor DIVARICATA
SwissprotQ8S9H74e-81DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA2Y5930.0A2Y593_ORYSI; Uncharacterized protein
STRINGONIVA05G19570.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.16e-81Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]