PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018034-PA
Common NameOsI_20006
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 170aa    MW: 17701.9 Da    PI: 9.9868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018034-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-1692137251
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +y+GVr+++ +g+Wv+eIr+p +   r r +lg++ tae Aa a++aa  
  BGIOSGA018034-PA  92 RYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATAEAAAVAHDAAVC 137
                       59****777.**********943...5*******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-2392164IPR001471AP2/ERF domain
PROSITE profilePS5103219.79692158IPR001471AP2/ERF domain
PfamPF008476.2E-992135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-2392158IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1592140IPR016177DNA-binding domain
PRINTSPR003673.0E-993104IPR001471AP2/ERF domain
PRINTSPR003673.0E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MPRSGILYAR VEKVSADLAE PTNGGRGGDT THTRRLVLTP PRTNELELRV ISEIVVAVSA  60
DDEQASPEGE DGTYMGRVAA SGGGGGGGEM MRYRGVRRRR WGKWVSEIRV PGTRERLWLG  120
SYATAEAAAV AHDAAVCLLR LGGGRRAAAG GGGGLNFPAR ALAADAAASS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638993.13e-56ethylene-responsive transcription factor ERF014
TrEMBLB8AYC51e-114B8AYC5_ORYSI; Uncharacterized protein
STRINGONIVA05G17560.14e-64(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.17e-08ERF family protein