PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018131-PA
Common NameOsI_19797
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SRS
Protein Properties Length: 453aa    MW: 44888.4 Da    PI: 7.4501
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018131-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.63.9e-692273923154
            DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkl 91 
                       sg+a+C+dCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerqq + aass  ++sa    ++a++k++r l s++++++s+t++
  BGIOSGA018131-PA 227 SGAATCHDCGNQAKKDCVHHRCRTCCKSRGFDCPTHVRSTWVPAARRRERQQLAGAASSPPTSSAfpaaTTASAKKPRLLGSQTTTTTSRTST 319
                       7889*************************************************9999999999889988899999****99************ PP

            DUF702  92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                       s+a+++++++tss          lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++
  BGIOSGA018131-PA 320 SNATTPRSFDTSSshqvasfrdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 392
                       ***********999********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.0E-61229391IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.4E-26231273IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.0E-25343389IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MATPLQSSLP LSSWWWPHSP TDDGSTPPAP HHGHVTSLAD DAYSSTPTPV SDSGAFAGWV  60
AAAGGGGGRG DDLSLGFNAA AAAAAAPAAA SAASLWGPVA AASSRQAAAL NYGLAAAGGG  120
DVGMVLVAPA ASYHHHRAAA AAAAAAAAAA AAEPVFPLLG TGQCALDADT AKSSGAAAAA  180
GVPPGSASAI HFWQSQPTTA AGAGGGSADK KPLPMLDYGG IGGPGGSGAA TCHDCGNQAK  240
KDCVHHRCRT CCKSRGFDCP THVRSTWVPA ARRRERQQLA GAASSPPTSS AFPAATTASA  300
KKPRLLGSQT TTTTSRTSTS NATTPRSFDT SSSHQVASFR DALPRHVRAP AVFRCVRVTS  360
VDDGDDEFAY QAAVTINGHM FRGFLYDQGA DDGRGGMAST SNDESSHGAG AAVPSISDLH  420
LGSASAAVPP HLYSGGSGGP LILGGLGYGN TMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1047100.0AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBankAC1362190.0AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881073.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLB8AXT90.0B8AXT9_ORYSI; Uncharacterized protein
TrEMBLQ6AV910.0Q6AV91_ORYSJ; Uncharacterized protein
STRINGORUFI05G15960.10.0(Oryza rufipogon)
STRINGORGLA05G0127300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-53Lateral root primordium (LRP) protein-related