PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018293-PA
Common NameOsI_19486
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 231aa    MW: 24948.5 Da    PI: 7.7903
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018293-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.49.5e-091180170
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyat 70
                      l pG++ +P+d+elv + L ++++g++l+l   i e+d +++  Pw+L +  +++ +e +f +k+ + +++
  BGIOSGA018293-PA 11 LLPGLKLDPSDDELVGRCLLRRLQGQPLPLGGDILEADPLSApPPWNLLAD-HGRGDEAFFLAKKGNGKRQ 80
                      579***************************888999987776478***743.3455678877776554332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-10482IPR003441NAC domain
PfamPF134569.8E-12140189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQPLPL GGDILEADPL SAPPPWNLLA  60
DHGRGDEAFF LAKKGNGKRQ RSSVEGQRMC VDGGRLRVPD DGRGGGGGLA FLPSIFPSPP  120
PVPRCSTPLS PSSPPFKPSR LIRGEETQTR IPAAMHEEIL DLLRCFADVE VRHIYREGNS  180
VAHTLCRQAY VHPGLWTDCS TLPAAVWEKI DDDLRGVVHE RLCNKKKKSS A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881581.15e-36uncharacterized protein LOC112939071
TrEMBLA2Y3971e-166A2Y397_ORYSI; Uncharacterized protein
STRINGONIVA05G12170.14e-78(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550713