PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018652-PA
Common NameOsI_18775
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 404aa    MW: 42788.9 Da    PI: 7.1665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018652-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-08122142526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G Ck+Gd C FaHg
  BGIOSGA018652-PA 122 ACPDFRK-GGCKRGDACEFAHG 142
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159118144IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7122142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5122144IPR000571Zinc finger, CCCH-type
SMARTSM0035612152175IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258152176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMMMGEGAHA PPWQQHVASP VSGVEGGGGR ESEVVAAPYH LLDALRHYLP SNEAAAAEDE  60
EEAAAVAAAV DAYACDEFRM YEFKVRRCAR GRSHDWTECP FAHPGEKARR RDPRRYCYSG  120
TACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRV  180
LPPSQQQGSN SPRGCGGGGA GAAASPLAES YDGSPLRRQA FESYLTKSIM SSSPTSTLVS  240
PPRSPPSESP PLSPDAAGAL RRGAWAGVGS PVNDVLVSLR QLRLGSPRSA PSCASFLPAG  300
YQYGSPKSPA AAAAAAAALY SLPSTPTRPS PVTVTTASGA TVTVEPLDLG LIEEEQPMER  360
VESGRALREK VFERLSKEAT VSTDAAAAAA GVAPDVGWVS DLIN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.319750.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329916010.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640763.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N40.0C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0E0HAQ70.0A0A0E0HAQ7_ORYNI; Uncharacterized protein
TrEMBLA2Y1940.0A2Y194_ORYSI; Uncharacterized protein
STRINGONIVA05G06810.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-77C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]