PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA018676-PA

Common Name

OsI_18730, WRKY67

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 194aa MW: 21400.7 Da PI: 6.269

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA018676-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	95	153	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh BGIOSGA018676-PA 95 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDREDHRYVITTYDGVHNHA 153 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-32	83	155	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-27	87	155	IPR003657	WRKY domain
PROSITE profile	PS50811	31.422	90	155	IPR003657	WRKY domain
SMART	SM00774	2.5E-34	95	154	IPR003657	WRKY domain
Pfam	PF03106	2.9E-23	96	152	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MAASVGLNPE AFFFSNSYSY SSSPFMASYT PEFSAAAIDA NLFSGELDFD CSLPAPAQEY 60 PENENTMMRY ESEEKMRARV NGRIGFRTRS EVEILDDGFK WRKYGKKAVK NSPNPRNYYR 120 CSTEGCNVKK RVERDREDHR YVITTYDGVH NHASPAAAAA ALQYAAAAGD YYSPPLSSAG 180 SPPAAYSAGG SLLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-27	81	156	3	78	Probable WRKY transcription factor 4
2lex_A	9e-27	81	156	3	78	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.19621	1e-133	leaf\| panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116632997	1e-133

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT832802	0.0	CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638018.1	1e-142	probable WRKY transcription factor 50
TrEMBL	A0A0E0PIC8	1e-140	A0A0E0PIC8_ORYRU; Uncharacterized protein
TrEMBL	A0A0P0WIN4	1e-140	A0A0P0WIN4_ORYSJ; Os05g0183100 protein (Fragment)
TrEMBL	Q65WY5	1e-140	Q65WY5_ORYSJ; Os05g0183100 protein
TrEMBL	Q6IEL4	1e-140	Q6IEL4_ORYSI; WRKY transcription factor 67
STRING	ORUFI05G05890.1	1e-141	(Oryza rufipogon)
STRING	OS05T0183100-01	1e-141	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-39	WRKY DNA-binding protein 50

Publications ? help Back to Top
Zhang ZL, et al. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol., 2004. 134(4): p. 1500-13 [PMID:15047897]