PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA018757-PA
Common NameOsI_18574
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 246aa    MW: 26844.8 Da    PI: 9.2782
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA018757-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-142569147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r rW++eE+e+++da  ++G + Wk+I + +  ++t  q++s+ qk+
  BGIOSGA018757-PA 25 RERWSAEEHERFLDALILFGRD-WKRIEAFVA-TKTVIQIRSHAQKH 69
                      78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1962074IPR017930Myb domain
SuperFamilySSF466892.09E-152075IPR009057Homeodomain-like
SMARTSM007172.9E-102472IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-152472IPR006447Myb domain, plants
PfamPF002491.2E-102569IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-62569IPR009057Homeodomain-like
CDDcd001671.55E-82770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAAMAAAAAG TKKKARKPYK ITRPRERWSA EEHERFLDAL ILFGRDWKRI EAFVATKTVI  60
QIRSHAQKHF LKARKFGLAG GLPPPLHPRR ATLLRANAAA ADMMPPPWLP SAGGGSIGCS  120
APPSGVQQSM AGRSPACYST DEASFRPLIH SNDNDCSFIE TPNCIGSGGE SWIGDDAFFM  180
QDETIRLPIS PDDLGFAQVY KFVGDMFGSG ERRPVEAHLR RLQGMDPAIS ETILLVLKNL  240
EANLSA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.707041e-155leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977237361e-155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241441e-153AC124144.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099P06, complete sequence.
GenBankAP0149611e-153AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-153CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.10.0protein REVEILLE 8
TrEMBLA2Y0Q00.0A2Y0Q0_ORYSI; Uncharacterized protein
STRINGORUFI05G04560.11e-180(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-27MYB_related family protein