PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA018905-PA

Common Name

OsI_18260

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 145aa MW: 14935 Da PI: 4.7543

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA018905-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.7	3.9e-19	11	66	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 l++lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ lka+la++++e BGIOSGA018905-PA 11 WLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQLARAHAE 66 5899************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.902	1	67	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-17	11	64	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MASSPLMSPS WLQELPEEQR ADAVSSMVYE ANARIRDPVY GCAGAICQLQ KQVNDLKAQL 60 ARAHAELAGA RAQHAHLVAL LCMEMAAAAP PQHPTTTAAA AAYCAAVGGA ASPAAPVDAL 120 YVVDGAGAAA MQASPIGWVD EPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	10	67	54	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	10	67	54	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079021	0.0	AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence.
GenBank	AC093089	0.0	AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638880.1	3e-90	LOB domain-containing protein 1
TrEMBL	A2XZV1	7e-98	A2XZV1_ORYSI; Uncharacterized protein
TrEMBL	I1PS17	1e-96	I1PS17_ORYGL; Uncharacterized protein
TrEMBL	Q75L85	7e-98	Q75L85_ORYSJ; Os05g0123000 protein
STRING	OS05T0123000-00	1e-98	(Oryza sativa)
STRING	ORGLA05G0016500.1	2e-97	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-20	LOB domain-containing protein 1