PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA019116-PA

Common Name

OsI_18308

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 148aa MW: 15955 Da PI: 9.9973

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA019116-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.4	7.4e-14	24	83	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR+RK++++eeL +++ L+aeN + ++ + e +k++ e+ BGIOSGA019116-PA 24 ERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGEN 83 5678999**********************************9999999998888877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-18	21	85	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.3	23	86	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-11	23	78	No hit	No description
Pfam	PF00170	8.6E-10	25	79	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-10	25	77	No hit	No description
PROSITE pattern	PS00036	0	28	43	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSSPSRRSSS PESNTSGGGG GADERKRKRM LSNRESARRS RARKQQRLEE LIAEAARLQA 60 ENARVEAQIG AYAGELSKVD GENAVLRARH GELAGRLQAL GSVLEILQVA GAPVDIPEIP 120 DDPLLRPWQP PFAAQPIVAT AMADAFQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	44	RRSRARKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.3373	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130598	0.0	AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBank	AK065180	0.0	AK065180.1 Oryza sativa Japonica Group cDNA clone:J013002D17, full insert sequence.
GenBank	AK104844	0.0	AK104844.1 Oryza sativa Japonica Group cDNA clone:001-042-G08, full insert sequence.
GenBank	AK105138	0.0	AK105138.1 Oryza sativa Japonica Group cDNA clone:001-102-F02, full insert sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	X57325	0.0	X57325.1 Rice lip19 mRNA for basic/leucine zipper protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639544.1	1e-101	ocs element-binding factor 1
Swissprot	P24068	3e-34	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	A2Y002	1e-100	A2Y002_ORYSI; Uncharacterized protein
TrEMBL	Q08418	1e-100	Q08418_ORYSA; Basic/leucine zipper protein
TrEMBL	Q688Q7	1e-100	Q688Q7_ORYSJ; BZIP transcription factor
STRING	OS05T0129300-02	1e-100	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	8e-25	basic region/leucine zipper motif 53

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]