PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019617-PA
Common NameOsI_19460
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 208aa    MW: 23505.1 Da    PI: 10.3993
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019617-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.1e-17352857
                      -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      t++qle+L++ + ++ yp+++ r+eL+ klgLt++q ++WF+ rR k++k
  BGIOSGA019617-PA  3 TPYQLEVLKRTYTEDLYPNETIRAELSVKLGLTDKQLQMWFCHRRLKDRK 52
                      89**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.382153IPR001356Homeobox domain
SMARTSM003894.1E-8157IPR001356Homeobox domain
SuperFamilySSF466898.13E-14252IPR009057Homeodomain-like
CDDcd000863.26E-12253No hitNo description
Gene3DG3DSA:1.10.10.607.1E-15352IPR009057Homeodomain-like
PfamPF000461.2E-14352IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKTPYQLEVL KRTYTEDLYP NETIRAELSV KLGLTDKQLQ MWFCHRRLKD RKPPPKRQQL  60
EEDVHVPVMA PPPVLPPPLP HSELTMAPGG MYGEQLLPSS SRRGTGRPSA ILDMSDLQCL  120
PLLTSHGTKS SPGEMIRLRW DTTDSEEVVR TRIPSSTPGQ HKARVLPAAG RGWPDTRGPP  180
ASPPWPTRCP LSLHTYPPRR HRLRQPSV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.146371e-160callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329813251e-160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639400.13e-46homeobox-DDT domain protein RLT2 isoform X1
RefseqXP_015639401.13e-46homeobox-DDT domain protein RLT2 isoform X2
TrEMBLB8AWL81e-147B8AWL8_ORYSI; Uncharacterized protein
STRINGORUFI05G12600.11e-113(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2352544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.13e-16homeobox-1