PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019718-PA
Common NameOsI_19666
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 177aa    MW: 19568.1 Da    PI: 4.7866
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019718-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.41.1e-13112171163
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCk 63 
                       kfY++YA+e+GFsvr+ ++kk+  n+ei  ++++Cs+eg+ +e+ k+  + ++   ++ t+C+
  BGIOSGA019718-PA 112 KFYKSYAHEAGFSVRVGQHKKQ--NEEILFKRYYCSREGYIKERVKD-ISDESGIIKKDTKCD 171
                       6*****************9998..999*****************999.666666667777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.7E-12112170IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MESSPATPWT PAQGKDVLPH QSGFDDLMNS EINPIIAVDG EPVVAVDSAY VEATAMDHAV  60
ITVEAVDAGV VAHLEQPSTP QPTSSPSIAE SCKEHLKPMV GMILDKLTDV EKFYKSYAHE  120
AGFSVRVGQH KKQNEEILFK RYYCSREGYI KERVKDISDE SGIIKKDTKC DGNQMWL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154794301e-41
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881107.19e-97protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA2Y3U31e-129A2Y3U3_ORYSI; Uncharacterized protein
STRINGSb01g028975.11e-39(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15006915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-07FAR1-related sequence 7