PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019758-PA
Common NameOsI_19749
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 469aa    MW: 47647.8 Da    PI: 4.7121
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019758-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS172.72.8e-53134424123374
              GRAS 123 lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.......eleeLrvkpgEalaVnlv 207
                        QW+ L +  a+Rp+gpp  lR+T+v++    s++ l++++   a  A++l+++++f+++  +++e+l         ++L v pg  laV   
  BGIOSGA019758-PA 134 NQWVELVRLVAARPGGPPgLLRLTVVNE----SEDFLSAVAAYVAAEAQRLDLSLQFHPV-LSSIEELsatatgsIGSRLVVIPGQPLAVVAN 221
                       7*************999989********....9**************************5.66666662222222235678888********* PP

              GRAS 208 lqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eakl 275
                       lq+hrll                          +++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al+yy+alfd+l +++ 
  BGIOSGA019758-PA 222 LQIHRLLafpdyvdgvasrrpaaeqsgssqhTMTTATKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNALNYYAALFDALeASST 314
                       ***************************99764455555589***********************************************55556 PP

              GRAS 276 pres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg......yrveeesgsl 358
                       p+++   +er+ vEr +lg+ei+++v  eg+ rrerhetl++W er+ +aGF+pv+     a++  l  ++v+ + g       r  +  g++
  BGIOSGA019758-PA 315 PPAAvppHERACVERWVLGEEIKDIVVREGTGRRERHETLGRWAERMVAAGFSPVTAARALASTETLAQQMVAaGGGgagagvLRAAHGGGCF 407
                       6666899*************************************************9888777766666666633334555444444557777 PP

              GRAS 359 v.lgWkdrpLvsvSaWr 374
                         ++W d p++svS W+
  BGIOSGA019758-PA 408 PvICWCDVPVFSVSTWT 424
                       57**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.1841396IPR005202Transcription factor GRAS
PfamPF035149.8E-51134424IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAAEIPRLAL GGGGGGAGGE RLPAAGEDSA PAATDAGKRP VVGLGFGSSL AAMAAAAAAG  60
IQPDAFALGG PAEYPAGDGE RDVLMVSFLR SIAAFLADGT CQMQVNDGLS CVVDLAGGDA  120
DGGGVGEGSG VDANQWVELV RLVAARPGGP PGLLRLTVVN ESEDFLSAVA AYVAAEAQRL  180
DLSLQFHPVL SSIEELSATA TGSIGSRLVV IPGQPLAVVA NLQIHRLLAF PDYVDGVASR  240
RPAAEQSGSS QHTMTTATKT KADALLRAIR DLNPKLVVLT ENEADHNVAE LGARVWNALN  300
YYAALFDALE ASSTPPAAVP PHERACVERW VLGEEIKDIV VREGTGRRER HETLGRWAER  360
MVAAGFSPVT AARALASTET LAQQMVAAGG GGAGAGVLRA AHGGGCFPVI CWCDVPVFSV  420
STWTARRVLV PAPPLWPPAA AGGAGPSGSG YGGDGPSTAS SSAAMWWVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-14135426142381Protein SCARECROW
5b3h_A8e-14135426141380Protein SCARECROW
5b3h_D8e-14135426141380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.10.0scarecrow-like protein 3
TrEMBLA2Y4180.0A2Y418_ORYSI; Uncharacterized protein
STRINGOMERI05G12130.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-27scarecrow-like 3