PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019760-PA
Common NameOsI_19751
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 577aa    MW: 59846.4 Da    PI: 7.8031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019760-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS230.57.7e-711745754374
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilk 92 
                        L +cAea++++  + a+a La +  +as dgd++qR+aa f+eA+a+ + r + ++++al ps++          e+ +a++ f +++P+l 
  BGIOSGA019760-PA 174 HLRRCAEALAASRPADADAELASIARMASADGDAVQRVAAAFAEAMARVVIRPWRGVSAALFPSDAGAAGdaltAWEAEFARQSFLNLCPLLH 266
                       6889*********************************************************66666544346767778888999********* PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       ++ ++ N+ Ile + +++ +Hi+D++  + ++W+ Llq La+R+ +  p lR+T v++    +k+ l + ++ La   ++ gvp++ ++ v++
  BGIOSGA019760-PA 267 LAAVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLQGLATRRaAVRPCLRLTIVHE----HKHFLGQAAQVLAAESDRHGVPLDLHI-VES 354
                       *****************************************98867799*********....99************************9.799 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                       ++e+l+l++L v+++ a+++ + lqlhrl+                           +++++s+ d++L+ +  lsP+ ++++e+ea+h  +s
  BGIOSGA019760-PA 355 SVEALKLDALGVRSDHAVVIVSTLQLHRLVgagilsttappspaaaaaasmitspLPPANMSSKVDRLLRGFHLLSPRAIILTENEANHFVPS 447
                       ****************************************************9987788888899**************************** PP

              GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllr 342
                       F +rf++al yy  lf ++e+  ++++ er+  Er ll++ei++v+ac ++  r +rhetl++W  r+++aGF  +p  +  +aa  ++++ +
  BGIOSGA019760-PA 448 FTDRFASALPYYEQLFAAMEEA-GAATVERKAAERYLLREEIKDVIACDHDGpRWARHETLGRWVVRMGAAGFALAPAITvvTAAGRVRAVAA 539
                       *******************887.78999*********************9988********************98876551144555566666 PP

              GRAS 343 kvksdg....yrveeesgslvlgWkdrpLvsvSaWr 374
                       + ++ g    y v e  g+l+l  +++p++ vSaWr
  BGIOSGA019760-PA 540 RLPGGGderrYGVTEGGGWLILNREEKPMFCVSAWR 575
                       6654334566*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.962145549IPR005202Transcription factor GRAS
PfamPF035142.7E-68174575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MEKGSSSTPS AANTSELMVA QAATAAATTT AAATTAAVPM TNFQLFGSMV PVPVASMATA  60
TAPAAVAAAD NGGHGSSSAS QNASGSGEGQ GGSMSLSLQL RPLGSTPTAA VAVSVPPMAA  120
APMMAGPAAA APAPAPPLAT MAVAQNASLA AVASALAAHR RNQATHRSAA LHGHLRRCAE  180
ALAASRPADA DAELASIARM ASADGDAVQR VAAAFAEAMA RVVIRPWRGV SAALFPSDAG  240
AAGDALTAWE AEFARQSFLN LCPLLHLAAV AVNEIILETT RNDKFIHIVD LGGIHHAHWV  300
ELLQGLATRR AAVRPCLRLT IVHEHKHFLG QAAQVLAAES DRHGVPLDLH IVESSVEALK  360
LDALGVRSDH AVVIVSTLQL HRLVGAGILS TTAPPSPAAA AAASMITSPL PPANMSSKVD  420
RLLRGFHLLS PRAIILTENE ANHFVPSFTD RFASALPYYE QLFAAMEEAG AATVERKAAE  480
RYLLREEIKD VIACDHDGPR WARHETLGRW VVRMGAAGFA LAPAITVVTA AGRVRAVAAR  540
LPGGGDERRY GVTEGGGWLI LNREEKPMFC VSAWRRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-261685751375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1057670.0AC105767.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B11, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638611.10.0scarecrow-like protein 3
TrEMBLB8AXQ70.0B8AXQ7_ORYSI; Uncharacterized protein
STRINGONIVA05G15000.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-32scarecrow-like 3