PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019793-PA
Common NameOsI_19817
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 348aa    MW: 39048 Da    PI: 8.9322
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019793-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95e-131167155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  BGIOSGA019793-PA 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 67
                      57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-81167IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-151177IPR016177DNA-binding domain
SMARTSM003802.2E-181281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-121276IPR001471AP2/ERF domain
PROSITE profilePS5103218.2281275IPR001471AP2/ERF domain
PRINTSPR003673.2E-51324IPR001471AP2/ERF domain
PRINTSPR003673.2E-55777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  60
AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR KSSAFSRGLP KYRGLPRQLH  120
NSRWDASLGH LLGNDYMSLG KDITLDGKFA GTFGLERKID LTNYIRWWLP KKTRQSDTSK  180
MEEVTDEIRA IESSMQRTEP YKFPSLGLHS NSKPSSVVLS ACDILSQSDA FKSFSEKSTK  240
LSEECTFSKE MDEGKTVTPV PATGHDTTAV NMNVNGLLVQ RAPYTLPSVT AQMKNTWNPA  300
DPSADPLFWT NFILPASQPV TMATIATTTF AKNEVGDNIL HVYGFPSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.879260.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1644219860.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8978770.0AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds.
GenBankEU3348570.0EU334857.1 Oryza sativa Indica Group AP2/EREBP-like protein (AP2LP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638088.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK25e-93AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA2Y4900.0A2Y490_ORYSI; Uncharacterized protein
TrEMBLB9FI250.0B9FI25_ORYSJ; Uncharacterized protein
STRINGORGLA05G0129100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-90AP2 family protein