PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019856-PA
Common NameOsI_19936
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SBP
Protein Properties Length: 934aa    MW: 102801 Da    PI: 6.5057
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019856-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.26.5e-35168242276
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  BGIOSGA019856-PA 168 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 242
                       ************************************************************************997 PP
2SBP40.86e-132813104776
                       SSEEETTT--SS--S-STTTT-------S- CS
               SBP  47 srfhelsefDeekrsCrrrLakhnerrrkk 76 
                       srfh l +fDe+krsCrr+L++hn+rrr+k
  BGIOSGA019856-PA 281 SRFHILLDFDEDKRSCRRKLERHNKRRRRK 310
                       9**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.4E-27162229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.487165242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-33166245IPR004333Transcription factor, SBP-box
PfamPF031107.9E-27168242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-10281313IPR004333Transcription factor, SBP-box
PfamPF031102.7E-6281310IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.802281310IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MDAPGGGGGG GGGVDAGEPV WDWGNLLDFA VHDDDSLVLP WGDDSIGIEA DPAEAALLPP  60
APSPQPAEAE AEAAGPASLP SSMQAEGSKR RVRKRDPRLV CPNYLAGRVP CACPEIDEMA  120
AALEVEDVAT ELLAGARKKP KGAGRGSGAA VGGSGGGASR GTPAEMKCQV PGCEADIREL  180
KGYHRRHRVC LRCAHAAAVM LDGVQKRYCQ QCGKFHILLD FDEDKRSCRR KLERHNKRRR  240
RKPDSKGILE KDIDDQLDFS ADGSGDGELR EAIVQNSLPS SRFHILLDFD EDKRSCRRKL  300
ERHNKRRRRK PDSKGILEKD IDDQLDFSAD GSGDGELREE NIDVTTSETL ETVLSNKVLD  360
RETPVGSDDV LSSPTCAQPS LQIDQSKSLV TFAASVEACL GTKQENTKLT NSPVHDTKST  420
YSSSCPTGRV SFKLYDWNPA EFPRRLRHQI FEWLSSMPVE LEGYIRPGCT ILTVFVAMPQ  480
HMWDKLSEDT GNLVKSLVNA PNSLLLGKGA FFIHVNNMIF QVLKDGATLT STRLEVQSPR  540
IHYVHPSWFE AGKPIDLILC GSSLDQPKFR SLVSFDGLYL KHDCRRILSH ETFDCIGSGE  600
HILDSQHEIF RINITTSKLD THGPAFVEVE NMFGLSNFVP ILVGSKHLCS ELEQIHDALC  660
GSSDISSDPC ELRGLRQTAM LGFLIDIGWL IRKPSIDEFQ NLLSLANIQR WICMMKFLIQ  720
NDFINVLEII VNSLDNIIGS ELLSNLEKGR LENHVTEFLG YVSEARNIVD NRPKYDKQRQ  780
VDTRWAGDYA PNQPKLGISV PLAESTGTSG EHDLHTTNAA SGEEENMPLV TKALPHRQCC  840
HPETSARWLN AASIGAFPGG AMRMRLATTV VIGAVTTDSW TRLSSQIHCL KCLTNIESLK  900
RLSHSAAVKL IKAYRIVCCC AVLFPSKAVK QSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A4e-37167247585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292310KRSCRRKLERHNKRRRRKP
2296308RRKLERHNKRRRR
3303310NKRRRRKP
4304309KRRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.194070.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329852660.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1000570.0AK100057.1 Oryza sativa Japonica Group cDNA clone:J013158B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640052.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLB8AY860.0B8AY86_ORYSI; Uncharacterized protein
STRINGONIVA05G16770.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-118squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]