PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019970-PA
Common NameOsI_20187
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 154aa    MW: 17245.8 Da    PI: 10.9745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019970-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.1e-0887134348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                        WT  E   lv++v + G g+W++  r +     Rt+ ++k++w+++l
  BGIOSGA019970-PA  87 HWTLKEITELVKGVSKNGVGSWTKLKRDFFstSIRTAVHLKDKWRNLL 134
                       5****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.32980134IPR017877Myb-like domain
SuperFamilySSF466891.95E-1382143IPR009057Homeodomain-like
SMARTSM007173.1E-484136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-987135IPR009057Homeodomain-like
PfamPF002498.7E-687134IPR001005SANT/Myb domain
CDDcd116604.90E-1688135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MMHEAKIKES DMCRGRSNRH IEHHYLPYGR EAEQGPAGAA SSSHRGGGGG IVLAGGYGGA  60
AGFWVEKPLR LETTTIRRHH LRKNNEHWTL KEITELVKGV SKNGVGSWTK LKRDFFSTSI  120
RTAVHLKDKW RNLLKACGIK FTSKRKVAVH ALHL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.631661e-127flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977276281e-127
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423921e-124AK242392.1 Oryza sativa Japonica Group cDNA, clone: J080064A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613834.12e-47uncharacterized protein LOC9268141
TrEMBLB8AYT61e-109B8AYT6_ORYSI; Uncharacterized protein
STRINGORUFI10G12060.12e-53(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-15TRF-like 6