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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA020123-PA |
| Common Name | OsI_20499 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
GRAS |
| Protein Properties |
Length: 425aa MW: 45416.8 Da PI: 6.1363 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA020123-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 257.9 | 3.7e-79 | 37 | 423 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely..kalppsetsekn...sseelaalkl..fsev 87
++lLl+cA a++s+d +laq++++ l+++as++gdp qRl++ +++AL ar r + +a+ e + +++++++l ++++
BGIOSGA020123-PA 37 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPSQRLTSWLLRALVARACRLCAAAPagAAVDFLERG--RappWGRAMSVTELadYVDL 127
699**************************************************944443300333333333..2345555555556688**** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
+P+++f++ + N aIl+av+g+++vH++D+++++++QWp+L++ L++Rp+g+p +RiT+ + ++ + + +e+g rLa fA++ gv++e
BGIOSGA020123-PA 128 TPWHRFGFTASNAAILRAVAGASAVHVVDLSVTHCMQWPTLIDVLSKRPGGAPAIRITVPSVRPAVpplLAVSSSELGARLAIFAKSKGVQLE 220
**********************************************************9887555578889999******************* PP
GRAS 178 fnvl..............vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
fnv+ ++++l+++ ++ +L ++ gEa++Vn++ l ++ +++rd +L++v+ l+P +++v++++ad++s+s++
BGIOSGA020123-PA 221 FNVVesatttspkktsttLCQELASVlsDPPSLGLRDGEAVVVNCQSWLRHVA------PDTRDLFLDTVRALNPCLLTVTDEDADLGSPSLA 307
****998888776655443344443367888889999************9998......66789***************************** PP
GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
r++ ++++++ l+d+l++++p++s r E++ +gr+i++v+ e + er e ++ er+++ GF v ++e+aa+++++ll++++
BGIOSGA020123-PA 308 SRMAGCFDFHWILLDALDMSAPKDSPRRLEQEAA-VGRKIESVIGEEDGA--ERSEPGARLAERMSRKGFAGVVFDEEAAAEVRRLLSEHA-T 396
****************************999999.**********99988..9**************************************.9 PP
GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
g+ v+ e++ lvl+Wk+++ v++ aW+
BGIOSGA020123-PA 397 GWGVKREDDMLVLTWKGHAAVFTGAWT 423
9*************************5 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MDMEHELRGG GVGAAAHGHG SICFSGGPVL VDGRRIQQLL LHCAAALESN DVTLAQQAMW 60
VLNNIASSQG DPSQRLTSWL LRALVARACR LCAAAPAGAA VDFLERGRAP PWGRAMSVTE 120
LADYVDLTPW HRFGFTASNA AILRAVAGAS AVHVVDLSVT HCMQWPTLID VLSKRPGGAP 180
AIRITVPSVR PAVPPLLAVS SSELGARLAI FAKSKGVQLE FNVVESATTT SPKKTSTTLC 240
QELASVLSDP PSLGLRDGEA VVVNCQSWLR HVAPDTRDLF LDTVRALNPC LLTVTDEDAD 300
LGSPSLASRM AGCFDFHWIL LDALDMSAPK DSPRRLEQEA AVGRKIESVI GEEDGAERSE 360
PGARLAERMS RKGFAGVVFD EEAAAEVRRL LSEHATGWGV KREDDMLVLT WKGHAAVFTG 420
AWTPN
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC113332 | 0.0 | AC113332.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1057_B02, complete sequence. |
| GenBank | AC130597 | 0.0 | AC130597.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017K09, complete sequence. |
| GenBank | AK070489 | 0.0 | AK070489.1 Oryza sativa Japonica Group cDNA clone:J023050L12, full insert sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
