PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020126-PA
Common NameOsI_20504
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 257aa    MW: 26912.6 Da    PI: 5.8859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020126-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.7e-062142511254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  BGIOSGA020126-PA 214 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 251
                       67788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.744202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-10212256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-6212256No hitNo description
SMARTSM003530.0042213257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-8216256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MADEHEWWNS PCSARTGDDE AACSTADADE SAVGSTPMSF GHGVQPASLS DAAASSSSSS  60
FLLAGQHMDY WTQDFMGGRA AAAATASFDT LLQLQLQLQG GDAASRRLLL GDHAAAPPRH  120
LVVPGAPYGG GGGDDTAAPP RGLSPTPYEA ADNLQQQQSF PGGHHVVSNT DRLHDHHQDA  180
GSPSPATRSS PGSPAAAKKP RIEAPSPMPT FKVRKEKLGD RITALQQLVS PFGKTDTASV  240
LHEAIEYIKF LHDQVAK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.802830.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166316770.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378340.0CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638165.11e-151transcription factor bHLH68 isoform X2
TrEMBLB8AZT50.0B8AZT5_ORYSI; Uncharacterized protein
STRINGONIVA05G22530.11e-157(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.21e-30bHLH family protein