PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020128-PA
Common NameOsI_20507
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 161aa    MW: 17629.9 Da    PI: 9.6161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020128-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.7e-0650871254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  BGIOSGA020128-PA 50 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 87
                      77788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.7443887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.77E-74892No hitNo description
SuperFamilySSF474592.36E-1248105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00614993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-95296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVQSNTDRLH DHHQDAGSPS PATRSSPGSP AAAKKPRIEA PSPMPTFKVR KEKLGDRITA  60
LQQLVSPFGK TDTASVLHEA IEYIKFLHDQ VASLSSPYLR CGRPVQLQHQ QGSHKVNGNC  120
EGKQLDLRSR GLCLVPVAST YTVASETATE FWHPTFGGTF R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.802830.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166316770.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378340.0CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638164.11e-114transcription factor bHLH68 isoform X1
RefseqXP_015638165.11e-114transcription factor bHLH68 isoform X2
SwissprotQ8GXT35e-49BH123_ARATH; Transcription factor bHLH123
TrEMBLB8AZQ51e-117B8AZQ5_ORYSI; Uncharacterized protein
STRINGOGLUM05G23050.11e-113(Oryza glumipatula)
STRINGORUFI05G23130.11e-113(Oryza rufipogon)
STRINGONIVA05G22530.11e-113(Oryza nivara)
STRINGORGLA05G0190400.11e-113(Oryza glaberrima)
STRINGOBART05G21860.11e-113(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]