PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020240-PA
Common NameOsI_20732
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 457aa    MW: 51049.8 Da    PI: 4.9482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020240-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.4e-34191102102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++ll
  BGIOSGA020240-PA  19 FLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTHLL 102
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  BGIOSGA020240-PA 103 KNIHRRKP 110
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3715108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-6115108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-3515108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3019108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-191942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-195769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MESSNLGGGG GGGGGPPPFL IKTYEMVEDA ATNHVVSWGP GGASFVVWNP LDFSRDLLPK  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEDFIRGHTH LLKNIHRRKP VHSHSLQNQI  120
NGPLAESERR ELEEEINRLK YEKSILVADL QRQNQQQYVI NWQMQAMEGR LVAMEQRQKN  180
IVASLCEMLQ RRGGAVSSSL LESDHFSKKR RVPKMDLFVD DCAAGEEQKV FQFQGIGTDA  240
PAMPPVLPVT NGEAFDRVEL SLVSLEKLFQ RANDACTAAE EMYSHGHGGT EPSTAICPEE  300
MNTAPMETGI DLQLPASLHP SSPNTGNAHL HLSTELTESP GFVQSPELPM AEIREDIHVT  360
RYPTQADVNS EIASSTDTSQ DGTSETEASH GPTNDVFWER FLTETPRSCL DESERQESPK  420
DDVKAELGCN GFHHREKVDQ ITEQMGHLAS AEQTLHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2311083129Heat shock factor protein 1
5d5v_B2e-2311083129Heat shock factor protein 1
5d5v_D2e-2311083129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.400180.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO165807440.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Hardly expressed in young leaves at 14 days after sowing (DAS). Expression detected in adult leaves at 28 DAS and increases with growing stage. {ECO:0000269|PubMed:12032317}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0500960.0AB050096.1 Oryza sativa Japonica Group Spl7 mRNA for heat stress transcription factor Spl7, complete cds.
GenBankAK1004120.0AK100412.1 Oryza sativa Japonica Group cDNA clone:J023087K12, full insert sequence.
GenBankAY3444920.0AY344492.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639851.10.0heat stress transcription factor A-4d
SwissprotQ93VB50.0HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA2Y6S90.0A2Y6S9_ORYSI; Uncharacterized protein
STRINGORUFI05G25150.10.0(Oryza rufipogon)
STRINGOS05T0530400-010.0(Oryza sativa)
STRINGONIVA05G24200.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-66heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]