PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020376-PA
Common NameOsI_21017
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 620aa    MW: 65561.1 Da    PI: 8.3037
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020376-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30367425259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  BGIOSGA020376-PA 367 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 425
                       7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-33351427IPR003657WRKY domain
SuperFamilySSF1182901.22E-27359427IPR003657WRKY domain
PROSITE profilePS5081129.987361427IPR003657WRKY domain
SMARTSM007749.7E-37366426IPR003657WRKY domain
PfamPF031061.1E-26368425IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MESYVGVKRK NVVVGGDVGR EMPVAPPSSS SAAVGMVEFP AAAAGLGYAG MTAKEAGGGY  60
QERRVVVGEM DFFKTAEKRG ERKEPPPATA TAAASGHAGA SPDDLSLNKD DLTINMGLLV  120
GRRRNSGSEE SIVDDGGVSS NDEEHREAKA ALAVTKAEIG RLSEENKRLK NMLSNVTTKY  180
NSLQMQFVTL MQQRRSVLAA PIHQQELLDP EKKEQEGSQQ QQQQQLIPRQ FISLGSASLQ  240
PDVEAPHSVV VVGGGGGDVC APSSSNPDAA VPAMMPLPHF DHHNHHHPIH GGRERGSSPA  300
EADHHRHRQQ EQPPPPPQQQ LLPPSWLPAD KVPRFLPGKG PEPIPEAATM RKARVSVRAR  360
SDAPMISDGC QWRKYGQKMA KGNPCPRAYY RCTMAAGCPV RKQVQRCAED RTVLITTYEG  420
NHNHPLPPAA MAMASTTAAA ASMLLSGSMP SADGSLMAGS NFLARAVLPC SSTVATISAS  480
APFPTVTLDL TQTAPPPPPA SSTQPQPPRP EPAQLQAALA EAARPVALPQ LFGQKLYDQS  540
KLSAVQAVAG TKGSDGGALA DTVNAATAAI ASDPNFTAVL AAALTSARRG VNFVATLPHI  600
ELSHALTFLW SSLNREKNNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21353429176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.10.0probable WRKY transcription factor 31
TrEMBLA2Y7K00.0A2Y7K0_ORYSI; Uncharacterized protein
STRINGOPUNC05G23690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-70WRKY family protein