PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020403-PA
Common NameOsI_21060
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 227aa    MW: 24097.9 Da    PI: 4.3373
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020403-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.89e-08871153058
                       TT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY  30 agCpvkkkversaedpkvveitYegeHnh 58 
                        gC+++k+v+r++ dp +++++Y g+H++
  BGIOSGA020403-PA  87 MGCNATKQVQRADGDPLLFDVVYLGDHTC 115
                       59*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.4E-577117IPR003657WRKY domain
PfamPF031062.0E-785115IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-785117IPR003657WRKY domain
SuperFamilySSF1182905.36E-787117IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVELCGGEGE GQIMLATELT QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS  60
CFPPPEHPPP AAGNAGRDAA FKKRQVMGCN ATKQVQRADG DPLLFDVVYL GDHTCGQAAV  120
AAAAQSAPPE HAGQEQQRQS SLLAAGTEGI HQQVVAEPMA APFLFTSTAA GGVDDGYFSF  180
ISPANSDCQF SSDFSAGSVG VDMDHEARFE DLFSSTLEFF QSEIQNL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.879720.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172406180.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1042840.0AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBankAK1083890.0AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.11e-137probable WRKY transcription factor 41
TrEMBLB8AWU21e-164B8AWU2_ORYSI; Uncharacterized protein
STRINGONIVA05G28480.11e-137(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.28e-12WRKY family protein