PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020451-PA
Common NameOsI_21160
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 325aa    MW: 35521.7 Da    PI: 5.6904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020451-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.11.3e-26170228259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers e p v++itY  eH h 
  BGIOSGA020451-PA 170 HDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKMVERSPEKPGVLVITYIAEHCHA 228
                       79*************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-26167230IPR003657WRKY domain
SuperFamilySSF1182902.35E-23167230IPR003657WRKY domain
SMARTSM007748.9E-32169229IPR003657WRKY domain
PROSITE profilePS5081127.669169230IPR003657WRKY domain
PfamPF031061.4E-21171227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEYSNDWDLQ ALVRSCGTAV ADSEPEPPPA PSTTRRAEAE TVVVGRAGGV PEFVGQPVRS  60
AAASFYDLEY LDLYHELPRA PFLVTAPSTS RERGEGGEHE VLISFPAIAS TSGQGRKQPG  120
RKPGVRTARP KRRLLALTAV VNLHARSMQQ EEPAEESGVR GAGCRRRRLH DLWAWRKYGQ  180
KPIKGSPYPR GYYKCSSLKA CMARKMVERS PEKPGVLVIT YIAEHCHAVP TQLNSLAGTT  240
RNNKPASPDQ QQQQQPSPGG ASTDEAAAAA AKTEDSADTT CSMADDENDL WAPVEMDMDD  300
FFGPFDDDLD HFLDDDAVLG RRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-151712311880Disease resistance protein RRS1
5w3x_D2e-151712311880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638808.10.0WRKY transcription factor 22-like
TrEMBLA2Y7Z20.0A2Y7Z2_ORYSI; Uncharacterized protein
STRINGORUFI05G29280.11e-177(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-32WRKY family protein