PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020503-PA
Common NameOsI_24525
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 184aa    MW: 20280.6 Da    PI: 7.3771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020503-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-065678123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+Cp C+++F++    + H+r+H
  BGIOSGA020503-PA 56 YPCPLCDRHFPTEKAVHGHMRSH 78
                      99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.73E-755130No hitNo description
PfamPF139125.7E-65679IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0555683IPR007087Zinc finger, C2H2
SMARTSM003550.00135678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
PfamPF139123.6E-8107131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014108135IPR007087Zinc finger, C2H2
SMARTSM003552.4108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAGQVFVHHL GGGSGGDDPT HPWLSLKSSH EMDDAVASWR EKLADMAAAD ERTGRYPCPL  60
CDRHFPTEKA VHGHMRSHPG RGWRGMEPPR EPSPGDLALA ADGKRYRYVC DRCKAPFETR  120
QALGGHRASH STKKGCSWHA KQLAMAKPPK NDFDLNHLSL EAIQAAAQEE QAAQEGNKDE  180
EPKN
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329933060.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642837.11e-135zinc finger protein ZAT2
TrEMBLA0A0E0HVS61e-134A0A0E0HVS6_ORYNI; Uncharacterized protein
TrEMBLA2YH631e-134A2YH63_ORYSI; Uncharacterized protein
STRINGONIVA06G31020.11e-135(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-15C2H2-like zinc finger protein