PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020596-PA
Common NameOsI_24339
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 304aa    MW: 32820.4 Da    PI: 4.8183
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020596-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.17.6e-16209243133
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                       C++Cg     Tp++Rrgpdg++tLCnaCGl+++ k
  BGIOSGA020596-PA 209 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANK 243
                       ****977777**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.9E-1173108IPR010399Tify domain
PROSITE profilePS5132014.97573108IPR010399Tify domain
PfamPF062003.3E-1376107IPR010399Tify domain
PROSITE profilePS5101713.404134176IPR010402CCT domain
PfamPF062036.6E-16134176IPR010402CCT domain
SMARTSM004011.5E-8203255IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-10207248No hitNo description
CDDcd002026.76E-12208249No hitNo description
Gene3DG3DSA:3.30.50.106.6E-14208244IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
PfamPF003201.4E-13209243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MARFEEEHRA LGAEEEDEEE EDELEEEEEE MEEDEDAQHH EGVGGEVAVP MDAEAAAQLD  60
PHGGMLAASG AVQPMASNQL TLSFQGEVYV FDSVSPDKVQ AVLLLLGGRE LNPGLGSGAS  120
SSAPYSKRLN FPHRVASLMR FREKRKERNF DKKIRYSVRK EVALRMQRNR GQFTSSKPKG  180
DEATSELTAS DGSPNWGSVE GRPPSAAECH HCGINAKATP MMRRGPDGPR TLCNACGLMW  240
ANKVKMPSSR CHANLGMLRD LSKAPPTPIQ VVASVNDGNG SAAAPTTEQE IPAPATANGH  300
ESST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.747461e-159flower| leaf| panicle| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2433340.0AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882282.10.0GATA transcription factor 20
SwissprotQ5Z4U50.0GAT20_ORYSJ; GATA transcription factor 20
TrEMBLB8B2420.0B8B242_ORYSI; Uncharacterized protein
STRINGOS06T0698900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-71ZIM-LIKE 2