PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020778-PA
Common NameOsI_23911
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 344aa    MW: 36899.5 Da    PI: 9.3645
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020778-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.7e-30191250159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv+rsa+d++v++ tYegeHnh 
  BGIOSGA020778-PA 191 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSADDNTVLVATYEGEHNHA 250
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.199186252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-29190252IPR003657WRKY domain
SuperFamilySSF1182901.03E-25190252IPR003657WRKY domain
SMARTSM007743.2E-35191251IPR003657WRKY domain
PfamPF031064.4E-25192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1905034Biological Processregulation of antifungal innate immune response
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDSWIEQTSL SLDLNVGLPS TARRSSAPAA PIKVLVEENF LSFKKDHEVE ALEAELRRAS  60
EENKKLTEML RAVVAKYPEL QGQVNDMMSA AAAAAVNAGN HQSSTSEGGS VSPSRKRIRS  120
VDSLDDAAHH RKPSPPFVAA AAAAAYASPD QMECTSAAAA AAAKRVVRED CKPKVSKRFV  180
HADPSDLSLV VKDGYQWRKY GQKVTKDNPC PRAYFRCSFA PACPVKKKVQ RSADDNTVLV  240
ATYEGEHNHA QPPHHDAGSK TAAAAKHSQH QPPPSAAAAV VRQQQEQAAA AGPSTEVAAR  300
KNLAEQMAAT LTRDPGFKAA LVTALSGRIL ELSPTRTDPS LERR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-221902531375WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.500150.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329914910.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response. Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo). Regulates negatively the basal defense responses to the compatible fungus M.oryzae. {ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00068PBMTransfer from AT2G25000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide). Accumulates in response to M.oryzae. {ECO:0000250|UniProtKB:Q0DAJ3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1062820.0AK106282.1 Oryza sativa Japonica Group cDNA clone:002-101-A04, full insert sequence.
GenBankAK1196440.0AK119644.1 Oryza sativa Japonica Group cDNA clone:002-130-G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641578.10.0WRKY transcription factor WRKY28-like
SwissprotB8B0R80.0WRK28_ORYSI; WRKY transcription factor WRKY28
TrEMBLA0A0E0HU980.0A0A0E0HU98_ORYNI; Uncharacterized protein
STRINGOS06T0649000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.17e-47WRKY DNA-binding protein 60