PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020812-PA
Common NameOsI_23841
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 403aa    MW: 45335.6 Da    PI: 6.6799
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020812-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-1889138155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  BGIOSGA020812-PA  89 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 138
                       78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1589147IPR016177DNA-binding domain
CDDcd000187.05E-1189145No hitNo description
PfamPF008477.5E-1089138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1790146IPR001471AP2/ERF domain
PROSITE profilePS5103217.68890146IPR001471AP2/ERF domain
SMARTSM003801.7E-3190152IPR001471AP2/ERF domain
PROSITE profilePS5103211.14135224IPR001471AP2/ERF domain
SMARTSM003809.8E-13164230IPR001471AP2/ERF domain
CDDcd000181.31E-12181226No hitNo description
SuperFamilySSF541714.9E-9186225IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-11189225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST  60
EQRHVAAAAE QWARPPSRKT RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  120
TAQAAARAYD QAAIKFRGVE ADINFTLDDY KEDIKKMNNF SKEEFVQVLR RQGAGFVRGS  180
SRFRGVTLHK YVYLGLYDTE MEAAKAYDKA AIKCCGKEAV TNFDTQAYED ELNLQSWDSE  240
LDLELSLGCS GGERAAGEVL HSAPSNQRTS LTFMLPEEEE MTACHRQRSI WARPSLAPAM  300
PDGGAVIRPD QHQHHPSSRN MLLMRFHVWF TNLHNSIRDD RYLIGRRLHN FGEDSLHSSE  360
PGTTTASDDD EHEQALIPRD QEGELGLRFR RHIMRGNQPR MAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.747840.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977251220.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429570.0AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.10.0ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH00.0AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA2YFF60.0A2YFF6_ORYSI; Uncharacterized protein
STRINGOGLUM06G23380.10.0(Oryza glumipatula)
STRINGORUFI06G23930.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-73AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]