PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020863-PA
Common NameOsI_23738
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 108aa    MW: 12294.2 Da    PI: 10.2473
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020863-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.9e-113881285328
              GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                        E ++lg+ei+ vvaceg e +erhe++++W +r+++ G++pv 
  BGIOSGA020863-PA  38 EECVMLGEEIRGVVACEGVELVERHERARQWAARMKADGMEPVG 81 
                       57789*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.6E-93881IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MSGTRSWPHS RAGERVIRRS RCRTWVILQT RGAQAPREEC VMLGEEIRGV VACEGVELVE  60
RHERARQWAA RMKADGMEPV GSYGHAFFFC WHKRPLCAIS AWRPAAAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.521492e-63stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329752992e-63
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035391e-178AP003539.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0040H10.
GenBankAP0149621e-178AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616659.13e-24scarecrow-like protein 3
TrEMBLB8B4P26e-72B8B4P2_ORYSI; Uncharacterized protein
STRINGOS11T0141500-001e-23(Oryza sativa)
STRINGORGLA12G0021500.11e-23(Oryza glaberrima)
STRINGOBART11G02570.14e-25(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.15e-11GRAS family protein