PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020883-PA
Common NameOsI_23711
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 307aa    MW: 31628 Da    PI: 9.7575
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020883-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06112137227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+ C+ +     Ck G++C+FaHg+
  BGIOSGA020883-PA 112 KTRMCNKYNTAEGCKWGSKCHFAHGE 137
                       89**********************96 PP
2zf-CCCH36.58e-12272297127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC +f + G C +GdrC+FaHg+
  BGIOSGA020883-PA 272 FKTKLCENFNK-GSCTFGDRCHFAHGE 297
                       69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356855171IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.6295972IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-14107142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727110138IPR000571Zinc finger, CCCH-type
SMARTSM003560.97110137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8110141IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-10177247IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.7E-15178246IPR004088K Homology domain, type 1
PROSITE profilePS5008414.802178242IPR004088K Homology domain, type 1
CDDcd001052.93E-13180242No hitNo description
SuperFamilySSF547911.9E-15180272IPR004088K Homology domain, type 1
PfamPF000136.0E-11180243IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.5E-17269304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131271298IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7271297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9271302IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9272297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEAGGGKRAA PEGTNGAAKR ARGWLVPRVS PAGYLVGGLG FSAALRLGFE LGGDCTSGCP  60
FGSSCHFLHN FPGGYQAAAK MTSHGGTAVA APPGRMPLGP GAPNGPPTSS VKTRMCNKYN  120
TAEGCKWGSK CHFAHGEREL GKPMLLDNSM PHPMGSMPFE APPMPGPDIV PPSTFGASAT  180
AKISVDASLA GGIIGKGGTN TKHISRMTGA KLAIRDNESN PNLKNIELEG TFDQIKHASA  240
MVTELIVRIS GNVPPAKNPG RGSHAGGPGS NFKTKLCENF NKGSCTFGDR CHFAHGESEL  300
RKPPAAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.496880.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329889960.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641069.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ30.0C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLB8B4M20.0B8B4M2_ORYSI; Uncharacterized protein
STRINGOGLUM06G22250.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-49C3H family protein