PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020952-PA
Common NameOsI_23552
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 265aa    MW: 31033 Da    PI: 8.741
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020952-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.95.8e-1730108179
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                       kfY +YAk  GFsvrk++ k++  +gei++r+fvCs+eg+re ++ + t+++r++ a t +gC akl++++++ +g+ +v+
  BGIOSGA020952-PA  30 KFYVDYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSCEGYRELKHFErTDRKREPWALTCCGCLAKLEIERNEeKGVHRVM 108
                       6****************99887..9*****************99987678889999***************9977777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-1630109IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSSYVSLED QEEYKMMGTV VFSSEEEGYK FYVDYAKGKG FSVRKNNLKR KDGEIIWRQF  60
VCSCEGYREL KHFERTDRKR EPWALTCCGC LAKLEIERNE EKGVHRVMSD SKKAQAVELR  120
MSGLRPFQIM EVMENNHDES DEDIRNFSSR STSLCKTDEN SPASTKPGVG EEVSTLKRKG  180
IIRFWQQRKD FKEISKDEYF AKNNEFATWS KEEKGKFFSD LSLESARDLF EKFVKTWNKG  240
KLPSQYYEGI TRGPRSAHRW NIKAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801531e-140root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024521e-140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-167CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611098.19e-84protein FAR1-RELATED SEQUENCE 5
TrEMBLB8B4690.0B8B469_ORYSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.19e-10FAR1 family protein