PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021086-PA
Common NameOsI_23288
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 513aa    MW: 54866.3 Da    PI: 6.4787
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021086-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-3196149255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  BGIOSGA021086-PA  96 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 149
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.60192152IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-2992150IPR009057Homeodomain-like
SuperFamilySSF466895.02E-1495150IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-2296151IPR006447Myb domain, plants
PfamPF002498.8E-997148IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVLDLNEGFG EGSEEGGVGE DGDEEDDDED DDDDDDDDGG STSEVAGGGR SSSNNSSTNH  60
NSGSDKDHDM NSSSSKADGG GDRVPTVRQY NRSKLPRLRW TPDLHMAFVH AVERLGGQER  120
ATPKLVLQMM NVRGLSIAHV KSHLQMYRSK KLDHESGHER GAISSVFSPM EFHMRRGDHR  180
FHHHDMFFQR AAAAGVSPFS SRMLHENGGG FFASRNPGLP ESSRLYGLFQ RRQQAPMQKF  240
DFKNCDSFSR NQEWAFNQQH AAARAAGAVN GHGPAKGLIH EMIFQKEGKP TSHLFDVRDA  300
IASTRVTSAT TAAAADHRLD GAGKAGNFDW IGSSSSRPLT RTMSAATAAT MGDHHHLRWR  360
GGAAGSGNTT ASSDPVVASE AALGSLLERA KTKATEAMRL ETPVKMTAAA VAAEEINSRT  420
PDLQLSLSPN AGDHRSAGKK RKFLSEQEVD SDKQQLPLTL SLSLRGGGDN GGGGGGGEAA  480
GRLEEEMTGS SSSKKAALGL STLDLTMSIK ALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-1897151357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1897151357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1897151357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1897151357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.878130.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329836290.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736060.0AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641453.10.0uncharacterized protein LOC4341235 isoform X1
TrEMBLA2YDV30.0A2YDV3_ORYSI; Uncharacterized protein
STRINGOBART06G17710.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-34G2-like family protein