PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA021174-PA

Common Name

OsI_23123

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 215aa MW: 23080.4 Da PI: 4.9417

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA021174-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.9	8.9e-28	45	101	2	57
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp+++ tY+g H BGIOSGA021174-PA 45 PDSWAWRKYGQKPIKGSPYPRGYYRCSSNkNCAARKQVERCRLDPSFLLLTYTGAHS 101 599***********************99************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-28	30	101	IPR003657	WRKY domain
PROSITE profile	PS50811	27.623	39	106	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-24	39	102	IPR003657	WRKY domain
SMART	SM00774	1.7E-31	44	105	IPR003657	WRKY domain
Pfam	PF03106	1.3E-22	46	101	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDGDAWWCPG AGGGGGSNNW DLGAVVRKKQ TRKEVVRVAA SGPAPDSWAW RKYGQKPIKG 60 SPYPRGYYRC SSNKNCAARK QVERCRLDPS FLLLTYTGAH SGHDVPLHRN SLAGTTRHKP 120 PPPPPLPSAA DKSPATAAEA ATASQSPGLS PTTPLRASSM ELHGEDDAEA ELQVEEDDMA 180 IDDEDDDDVA DETISTVPWG TPISDAIIAA SYEWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-16	46	106	16	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881961.1	3e-99	WRKY transcription factor 22-like
Swissprot	Q9FLX8	7e-41	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A2YDD4	1e-155	A2YDD4_ORYSI; Uncharacterized protein
STRING	OGLUM06G17360.1	1e-131	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12562	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	7e-37	WRKY family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]