PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021176-PA
Common NameOsI_23121
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 217aa    MW: 23937 Da    PI: 8.7105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021176-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.6e-10529327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      +++C +++rtG+Ck+ ++CkF+H++
  BGIOSGA021176-PA  5 EKECAYYLRTGQCKFASTCKFHHPQ 29
                      679********************97 PP
2zf-CCCH40.83.6e-13165190227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+f+++tG Ck+G+ CkF+H++
  BGIOSGA021176-PA 165 DQPECQFYMKTGDCKFGAVCKFHHPK 190
                       689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.9E-4229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6430IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7529IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4828IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511163191IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10165190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6166193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5169191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MRPNEKECAY YLRTGQCKFA STCKFHHPQP SNTMVAVRNS MYSPGQSATS PGQHTYPGAV  60
TNWTLSRSAS FIASPRWPGH SGYAPVIVPQ GLVQVPGWNP YAAQMGSSSP DDQQRTPVTT  120
QYYGSRQSET GGMGDHGMYQ SYQGGSVPVG VYTVQGENIF PERPDQPECQ FYMKTGDCKF  180
GAVCKFHHPK ERLVPAPNCA LNSLGLPLRP VRFFFLC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.149120.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379881740.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620174.11e-152zinc finger CCCH domain-containing protein 66 isoform X1
RefseqXP_015620175.11e-152zinc finger CCCH domain-containing protein 66 isoform X2
SwissprotQ2QT651e-153C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLB8B3551e-161B8B355_ORYSI; Uncharacterized protein
STRINGOGLUM12G10570.11e-151(Oryza glumipatula)
STRINGOMERI12G06510.11e-151(Oryza meridionalis)
STRINGORUFI12G10410.11e-151(Oryza rufipogon)
STRINGOS12T0405100-011e-151(Oryza sativa)
STRINGORGLA12G0088700.11e-151(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-62zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]