PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021223-PA
Common NameOsI_23013
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 435aa    MW: 48211.7 Da    PI: 8.4006
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021223-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.4e-091375656
                      S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
          Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                      +ft+ ++ e+e+  ++  n  p ++ ++ LA+k            ++ +qV +WFqNrR+ ++
  BGIOSGA021223-PA 13 RFTQAEVAEMEARLQQlnNAIPHRSVIQALADKFtssparsgkvAVQPKQVWNWFQNRRYSHR 75
                      69*************776999***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0056781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-71280IPR009057Homeodomain-like
SuperFamilySSF466898.98E-111278IPR009057Homeodomain-like
PfamPF000462.5E-61375IPR001356Homeobox domain
PROSITE profilePS5007110.1391377IPR001356Homeobox domain
PfamPF167196.2E-36200318IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGRPPSTGGP AFRFTQAEVA EMEARLQQLN NAIPHRSVIQ ALADKFTSSP ARSGKVAVQP  60
KQVWNWFQNR RYSHRSRSSR GPPTLMQTKM LPTGSDEHKS PPFRAMPSAS AHSGSPLGKG  120
SLESGQVEFE AKSARDGACL VGLTMTQPIY SVKFKNSMDN SKPPDAPVLL VNIPLRPLIA  180
LVSTPVMLQP PLRQLPKKEH QASWYDVAAF LSHRLFESGD PEVRVRFSGF GAEEDEWINV  240
RKCVRQRSLP CESTECVAVL PGDLILCFQE GKEQALYFDA RVLDAQRRRH DVRGCRCRFL  300
VRYDHDHSEE IVPLRKVCRR PETDYRLQIL HAARAAGMAK EAVVDLVSHN DKSSAEQKPP  360
KQHKMMDVNT DEVTMVSNQD QEEPTGKPAA TLPAAPVKTL NDSASASASD VQMGEAQAAP  420
KVESSDEVED KMKEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-421973229134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-421973229134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-421973229134SHH1 SAWADEE
4iur_B4e-421973229134SHH1 SAWADEE
4iut_A4e-421973229134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-421973229134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-421973229134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-421973229134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-421973229134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-421973229134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180950.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329785770.0
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685600.0AK068560.1 Oryza sativa Japonica Group cDNA clone:J013151L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644221.11e-168protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ72e-76SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLB8B2E90.0B8B2E9_ORYSI; Uncharacterized protein
STRINGOGLUM06G16400.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.12e-65sequence-specific DNA binding transcription factors;sequence-specific DNA binding