PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021543-PA
Common NameOsI_22366
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 400aa    MW: 46346.8 Da    PI: 9.0804
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021543-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.47.5e-2611100190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+  Y+ ++GF+vr+++++ksk +g it++++vCs+eg+r+ +k++ ++++r+raetrtgCka+++++ ++  g + v++l+leHnHel+
  BGIOSGA021543-PA  11 EFWTYYGGRTGFDVRINYENKSKVDGVITSARYVCSNEGYRAIDKRD-HNTKRPRAETRTGCKARIRITVDReVGDYSVYDLVLEHNHELQ 100
                       69******************************************999.99*******************99989***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-2111100IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.483331369IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-5342366IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4344371IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MKFKSTKEAW EFWTYYGGRT GFDVRINYEN KSKVDGVITS ARYVCSNEGY RAIDKRDHNT  60
KRPRAETRTG CKARIRITVD REVGDYSVYD LVLEHNHELQ LPSTCHLMPS QRKISSLQAF  120
EIETMDDSGI GPKAAHELAS RQVGGSVNLG YTRRVLKNHL RTKRQRELMY GEAGNEATFE  180
ETFSTIRSKV HKQTWLNSIY KVKEKWAECY MRNVYTLGMR STQLSESLNN DLKNHLKSDL  240
DIIQFFNNLE RVIKGKRDNE LDAEYEARKK LPRIKMRVPI LVQASKIYTP CIFEYFQNEY  300
ERSMAAYIKS SEHNEFIVAI EAPGEASTFE EECKVVGNYA EQQALCTCGQ FERTGILCSH  360
ALKVLDVMNI KSLPKRYILK RWTREARVGA IEDCYGKIVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.516980.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329734700.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040270.0AP004027.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1136_C11.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877975.12e-97protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8B4I70.0B8B4I7_ORYSI; Uncharacterized protein
TrEMBLB9FSI20.0B9FSI2_ORYSJ; Uncharacterized protein
STRINGTraes_2AS_BB6B8AC48.21e-94(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-30FAR1-related sequence 5